HL_9KMU_011

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

9KMU|1|2|U|541, 9KMU|1|2|U|542, 9KMU|1|2|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMU_011 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.2378

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9KMU|1|2|C|539
9KMU|1|2|U|540
9KMU|1|2|U|541
9KMU|1|2|U|542
9KMU|1|2|C|543
9KMU|1|2|G|544

Current chains

Chain 2

18S ribosomal RNA

Nearby chains