HL_9KMU_021

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMU|1|2|A|1282, 9KMU|1|2|C|1283, 9KMU|1|2|A|1284, 9KMU|1|2|G|1285, 9KMU|1|2|G|1286, 9KMU|1|2|A|1287, 9KMU|1|2|A|1293, 9KMU|1|2|G|1294, 9KMU|1|2|U|1297, 9KMU|1|2|U|1304, 9KMU|1|2|U|1306, 9KMU|1|2|U|1307, 9KMU|1|2|U|1308, 9KMU|1|2|C|1311, 9KMU|1|2|U|1314, 9KMU|1|2|U|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMU|1|2|G|1281
9KMU|1|2|A|1282
9KMU|1|2|C|1283
9KMU|1|2|A|1284
9KMU|1|2|G|1285
9KMU|1|2|G|1286
9KMU|1|2|A|1287
9KMU|1|2|U|1288
9KMU|1|2|U|1289
9KMU|1|2|G|1290
9KMU|1|2|A|1291
9KMU|1|2|C|1292
9KMU|1|2|A|1293
9KMU|1|2|G|1294
9KMU|1|2|A|1295
9KMU|1|2|U|1296
9KMU|1|2|U|1297
9KMU|1|2|G|1298
9KMU|1|2|A|1299
9KMU|1|2|U|1300
9KMU|1|2|A|1301
9KMU|1|2|G|1302
9KMU|1|2|C|1303
9KMU|1|2|U|1304
9KMU|1|2|C|1305
9KMU|1|2|U|1306
9KMU|1|2|U|1307
9KMU|1|2|U|1308
9KMU|1|2|C|1309
9KMU|1|2|U|1310
9KMU|1|2|C|1311
9KMU|1|2|G|1312
9KMU|1|2|A|1313
9KMU|1|2|U|1314
9KMU|1|2|U|1315
9KMU|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31