HL_9KMV_015

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9KMV|1|2|A|886, 9KMV|1|2|U|887, 9KMV|1|2|U|889, 9KMV|1|2|U|890, 9KMV|1|2|G|891, 9KMV|1|2|U|892, 9KMV|1|2|U|893, 9KMV|1|2|G|894, 9KMV|1|2|U|897, 9KMV|1|2|U|898, 9KMV|1|2|U|899, 9KMV|1|2|C|900, 9KMV|1|2|G|901

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|C|884
9KMV|1|2|U|885
9KMV|1|2|A|886
9KMV|1|2|U|887
9KMV|1|2|U|888
9KMV|1|2|U|889
9KMV|1|2|U|890
9KMV|1|2|G|891
9KMV|1|2|U|892
9KMV|1|2|U|893
9KMV|1|2|G|894
9KMV|1|2|G|895
9KMV|1|2|U|896
9KMV|1|2|U|897
9KMV|1|2|U|898
9KMV|1|2|U|899
9KMV|1|2|C|900
9KMV|1|2|G|901
9KMV|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain L

Small ribosomal subunit protein uS17