HL_9KMV_023

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMV|1|2|A|1284, 9KMV|1|2|A|1287, 9KMV|1|2|A|1291, 9KMV|1|2|C|1292, 9KMV|1|2|A|1293, 9KMV|1|2|G|1294, 9KMV|1|2|U|1297, 9KMV|1|2|G|1298, 9KMV|1|2|U|1300, 9KMV|1|2|U|1304, 9KMV|1|2|C|1305, 9KMV|1|2|U|1306, 9KMV|1|2|U|1307, 9KMV|1|2|U|1308, 9KMV|1|2|G|1312

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1281
9KMV|1|2|A|1282
9KMV|1|2|C|1283
9KMV|1|2|A|1284
9KMV|1|2|G|1285
9KMV|1|2|G|1286
9KMV|1|2|A|1287
9KMV|1|2|U|1288
9KMV|1|2|U|1289
9KMV|1|2|G|1290
9KMV|1|2|A|1291
9KMV|1|2|C|1292
9KMV|1|2|A|1293
9KMV|1|2|G|1294
9KMV|1|2|A|1295
9KMV|1|2|U|1296
9KMV|1|2|U|1297
9KMV|1|2|G|1298
9KMV|1|2|A|1299
9KMV|1|2|U|1300
9KMV|1|2|A|1301
9KMV|1|2|G|1302
9KMV|1|2|C|1303
9KMV|1|2|U|1304
9KMV|1|2|C|1305
9KMV|1|2|U|1306
9KMV|1|2|U|1307
9KMV|1|2|U|1308
9KMV|1|2|C|1309
9KMV|1|2|U|1310
9KMV|1|2|C|1311
9KMV|1|2|G|1312
9KMV|1|2|A|1313
9KMV|1|2|U|1314
9KMV|1|2|U|1315
9KMV|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31