HL_9KMV_025

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9KMV|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMV_025 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.0602

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9KMV|1|2|G|1366
9KMV|1|2|U|1367
9KMV|1|2|U|1368
9KMV|1|2|A|1369
9KMV|1|2|A|1370
9KMV|1|2|U|1371
9KMV|1|2|U|1372
9KMV|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

Small ribosomal subunit protein eS17