HL_9KMX_015

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9KMX|1|2|U|887, 9KMX|1|2|U|889, 9KMX|1|2|G|891, 9KMX|1|2|U|892, 9KMX|1|2|U|893, 9KMX|1|2|G|894, 9KMX|1|2|G|895, 9KMX|1|2|U|896, 9KMX|1|2|U|897, 9KMX|1|2|U|898, 9KMX|1|2|U|899, 9KMX|1|2|C|900, 9KMX|1|2|G|901

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|C|884
9KMX|1|2|U|885
9KMX|1|2|A|886
9KMX|1|2|U|887
9KMX|1|2|U|888
9KMX|1|2|U|889
9KMX|1|2|U|890
9KMX|1|2|G|891
9KMX|1|2|U|892
9KMX|1|2|U|893
9KMX|1|2|G|894
9KMX|1|2|G|895
9KMX|1|2|U|896
9KMX|1|2|U|897
9KMX|1|2|U|898
9KMX|1|2|U|899
9KMX|1|2|C|900
9KMX|1|2|G|901
9KMX|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6