HL_9KMX_023

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMX|1|2|A|1284, 9KMX|1|2|A|1287, 9KMX|1|2|A|1291, 9KMX|1|2|C|1292, 9KMX|1|2|A|1293, 9KMX|1|2|G|1294, 9KMX|1|2|U|1297, 9KMX|1|2|G|1298, 9KMX|1|2|U|1300, 9KMX|1|2|U|1304, 9KMX|1|2|C|1305, 9KMX|1|2|U|1308, 9KMX|1|2|G|1312

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|G|1281
9KMX|1|2|A|1282
9KMX|1|2|C|1283
9KMX|1|2|A|1284
9KMX|1|2|G|1285
9KMX|1|2|G|1286
9KMX|1|2|A|1287
9KMX|1|2|U|1288
9KMX|1|2|U|1289
9KMX|1|2|G|1290
9KMX|1|2|A|1291
9KMX|1|2|C|1292
9KMX|1|2|A|1293
9KMX|1|2|G|1294
9KMX|1|2|A|1295
9KMX|1|2|U|1296
9KMX|1|2|U|1297
9KMX|1|2|G|1298
9KMX|1|2|A|1299
9KMX|1|2|U|1300
9KMX|1|2|A|1301
9KMX|1|2|G|1302
9KMX|1|2|C|1303
9KMX|1|2|U|1304
9KMX|1|2|C|1305
9KMX|1|2|U|1306
9KMX|1|2|U|1307
9KMX|1|2|U|1308
9KMX|1|2|C|1309
9KMX|1|2|U|1310
9KMX|1|2|C|1311
9KMX|1|2|G|1312
9KMX|1|2|A|1313
9KMX|1|2|U|1314
9KMX|1|2|U|1315
9KMX|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31