HL_9KMY_008

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

9KMY|1|2|C|450, 9KMY|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|C|441
9KMY|1|2|C|442
9KMY|1|2|U|443
9KMY|1|2|G|444
9KMY|1|2|A|445
9KMY|1|2|G|446
9KMY|1|2|A|447
9KMY|1|2|A|448
9KMY|1|2|A|449
9KMY|1|2|C|450
9KMY|1|2|G|451
9KMY|1|2|G|452

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain Y

Small ribosomal subunit protein eS24