HL_9KMY_015

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9KMY|1|2|U|887, 9KMY|1|2|U|888, 9KMY|1|2|U|890, 9KMY|1|2|G|891, 9KMY|1|2|U|892, 9KMY|1|2|U|893, 9KMY|1|2|G|894, 9KMY|1|2|U|897, 9KMY|1|2|U|898, 9KMY|1|2|U|899

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|C|884
9KMY|1|2|U|885
9KMY|1|2|A|886
9KMY|1|2|U|887
9KMY|1|2|U|888
9KMY|1|2|U|889
9KMY|1|2|U|890
9KMY|1|2|G|891
9KMY|1|2|U|892
9KMY|1|2|U|893
9KMY|1|2|G|894
9KMY|1|2|G|895
9KMY|1|2|U|896
9KMY|1|2|U|897
9KMY|1|2|U|898
9KMY|1|2|U|899
9KMY|1|2|C|900
9KMY|1|2|G|901
9KMY|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS17