HL_9KMY_023

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMY|1|2|A|1282, 9KMY|1|2|C|1283, 9KMY|1|2|U|1289, 9KMY|1|2|U|1297, 9KMY|1|2|A|1299, 9KMY|1|2|U|1300, 9KMY|1|2|U|1306, 9KMY|1|2|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|1281
9KMY|1|2|A|1282
9KMY|1|2|C|1283
9KMY|1|2|A|1284
9KMY|1|2|G|1285
9KMY|1|2|G|1286
9KMY|1|2|A|1287
9KMY|1|2|U|1288
9KMY|1|2|U|1289
9KMY|1|2|G|1290
9KMY|1|2|A|1291
9KMY|1|2|C|1292
9KMY|1|2|A|1293
9KMY|1|2|G|1294
9KMY|1|2|A|1295
9KMY|1|2|U|1296
9KMY|1|2|U|1297
9KMY|1|2|G|1298
9KMY|1|2|A|1299
9KMY|1|2|U|1300
9KMY|1|2|A|1301
9KMY|1|2|G|1302
9KMY|1|2|C|1303
9KMY|1|2|U|1304
9KMY|1|2|C|1305
9KMY|1|2|U|1306
9KMY|1|2|U|1307
9KMY|1|2|U|1308
9KMY|1|2|C|1309
9KMY|1|2|U|1310
9KMY|1|2|C|1311
9KMY|1|2|G|1312
9KMY|1|2|A|1313
9KMY|1|2|U|1314
9KMY|1|2|U|1315
9KMY|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31