HL_9KMY_029

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9KMY|1|2|C|1660, 9KMY|1|2|A|1661, 9KMY|1|2|U|1662, 9KMY|1|2|A|1663, 9KMY|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|1658
9KMY|1|2|U|1659
9KMY|1|2|C|1660
9KMY|1|2|A|1661
9KMY|1|2|U|1662
9KMY|1|2|A|1663
9KMY|1|2|A|1664
9KMY|1|2|G|1665
9KMY|1|2|C|1666

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14