HL_9KMZ_015

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUCUAUUUUGUUGGUUUUCGGAAC

Length

25 nucleotides

Bulged bases

9KMZ|1|2|A|886, 9KMZ|1|2|G|891, 9KMZ|1|2|U|892, 9KMZ|1|2|U|893, 9KMZ|1|2|G|894, 9KMZ|1|2|G|895, 9KMZ|1|2|U|898, 9KMZ|1|2|U|899, 9KMZ|1|2|C|900, 9KMZ|1|2|G|901

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|881
9KMZ|1|2|U|882
9KMZ|1|2|U|883
9KMZ|1|2|C|884
9KMZ|1|2|U|885
9KMZ|1|2|A|886
9KMZ|1|2|U|887
9KMZ|1|2|U|888
9KMZ|1|2|U|889
9KMZ|1|2|U|890
9KMZ|1|2|G|891
9KMZ|1|2|U|892
9KMZ|1|2|U|893
9KMZ|1|2|G|894
9KMZ|1|2|G|895
9KMZ|1|2|U|896
9KMZ|1|2|U|897
9KMZ|1|2|U|898
9KMZ|1|2|U|899
9KMZ|1|2|C|900
9KMZ|1|2|G|901
9KMZ|1|2|G|902
9KMZ|1|2|A|903
9KMZ|1|2|A|904
9KMZ|1|2|C|905

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain L

Small ribosomal subunit protein uS17