HL_9KMZ_022

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KMZ|1|2|A|1282, 9KMZ|1|2|C|1283, 9KMZ|1|2|A|1284, 9KMZ|1|2|G|1286, 9KMZ|1|2|A|1291, 9KMZ|1|2|A|1293, 9KMZ|1|2|G|1294, 9KMZ|1|2|U|1297, 9KMZ|1|2|G|1298, 9KMZ|1|2|A|1299, 9KMZ|1|2|U|1300, 9KMZ|1|2|A|1301, 9KMZ|1|2|C|1303, 9KMZ|1|2|U|1304, 9KMZ|1|2|U|1306, 9KMZ|1|2|U|1310, 9KMZ|1|2|C|1311, 9KMZ|1|2|U|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|1281
9KMZ|1|2|A|1282
9KMZ|1|2|C|1283
9KMZ|1|2|A|1284
9KMZ|1|2|G|1285
9KMZ|1|2|G|1286
9KMZ|1|2|A|1287
9KMZ|1|2|U|1288
9KMZ|1|2|U|1289
9KMZ|1|2|G|1290
9KMZ|1|2|A|1291
9KMZ|1|2|C|1292
9KMZ|1|2|A|1293
9KMZ|1|2|G|1294
9KMZ|1|2|A|1295
9KMZ|1|2|U|1296
9KMZ|1|2|U|1297
9KMZ|1|2|G|1298
9KMZ|1|2|A|1299
9KMZ|1|2|U|1300
9KMZ|1|2|A|1301
9KMZ|1|2|G|1302
9KMZ|1|2|C|1303
9KMZ|1|2|U|1304
9KMZ|1|2|C|1305
9KMZ|1|2|U|1306
9KMZ|1|2|U|1307
9KMZ|1|2|U|1308
9KMZ|1|2|C|1309
9KMZ|1|2|U|1310
9KMZ|1|2|C|1311
9KMZ|1|2|G|1312
9KMZ|1|2|A|1313
9KMZ|1|2|U|1314
9KMZ|1|2|U|1315
9KMZ|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31