HL_9KMZ_027

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUUGCAAUUAUUC

Length

14 nucleotides

Bulged bases

9KMZ|1|2|A|1614, 9KMZ|1|2|U|1615, 9KMZ|1|2|U|1616, 9KMZ|1|2|C|1618, 9KMZ|1|2|U|1621, 9KMZ|1|2|U|1622, 9KMZ|1|2|A|1623, 9KMZ|1|2|U|1624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|1613
9KMZ|1|2|A|1614
9KMZ|1|2|U|1615
9KMZ|1|2|U|1616
9KMZ|1|2|G|1617
9KMZ|1|2|C|1618
9KMZ|1|2|A|1619
9KMZ|1|2|A|1620
9KMZ|1|2|U|1621
9KMZ|1|2|U|1622
9KMZ|1|2|A|1623
9KMZ|1|2|U|1624
9KMZ|1|2|U|1625
9KMZ|1|2|C|1626

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain d

Small ribosomal subunit protein uS14