HL_9KMZ_028

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUCAUAAGC

Length

9 nucleotides

Bulged bases

9KMZ|1|2|G|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|1658
9KMZ|1|2|U|1659
9KMZ|1|2|C|1660
9KMZ|1|2|A|1661
9KMZ|1|2|U|1662
9KMZ|1|2|A|1663
9KMZ|1|2|A|1664
9KMZ|1|2|G|1665
9KMZ|1|2|C|1666

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14