HL_9KN0_015

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUAUUUUGUUGGUUUUCGG

Length

19 nucleotides

Bulged bases

9KN0|1|2|A|886, 9KN0|1|2|U|888, 9KN0|1|2|U|889, 9KN0|1|2|U|890, 9KN0|1|2|G|891, 9KN0|1|2|U|892, 9KN0|1|2|U|893, 9KN0|1|2|G|894, 9KN0|1|2|G|895, 9KN0|1|2|U|896, 9KN0|1|2|U|897, 9KN0|1|2|U|898, 9KN0|1|2|U|899, 9KN0|1|2|C|900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|884
9KN0|1|2|U|885
9KN0|1|2|A|886
9KN0|1|2|U|887
9KN0|1|2|U|888
9KN0|1|2|U|889
9KN0|1|2|U|890
9KN0|1|2|G|891
9KN0|1|2|U|892
9KN0|1|2|U|893
9KN0|1|2|G|894
9KN0|1|2|G|895
9KN0|1|2|U|896
9KN0|1|2|U|897
9KN0|1|2|U|898
9KN0|1|2|U|899
9KN0|1|2|C|900
9KN0|1|2|G|901
9KN0|1|2|G|902

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain L

Small ribosomal subunit protein uS17