HL_9KN0_022

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUC

Length

36 nucleotides

Bulged bases

9KN0|1|2|C|1283, 9KN0|1|2|U|1288, 9KN0|1|2|U|1289, 9KN0|1|2|G|1294, 9KN0|1|2|U|1296, 9KN0|1|2|U|1297, 9KN0|1|2|G|1298, 9KN0|1|2|A|1299, 9KN0|1|2|U|1300, 9KN0|1|2|A|1301, 9KN0|1|2|C|1303, 9KN0|1|2|U|1304, 9KN0|1|2|C|1305, 9KN0|1|2|U|1306

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|G|1281
9KN0|1|2|A|1282
9KN0|1|2|C|1283
9KN0|1|2|A|1284
9KN0|1|2|G|1285
9KN0|1|2|G|1286
9KN0|1|2|A|1287
9KN0|1|2|U|1288
9KN0|1|2|U|1289
9KN0|1|2|G|1290
9KN0|1|2|A|1291
9KN0|1|2|C|1292
9KN0|1|2|A|1293
9KN0|1|2|G|1294
9KN0|1|2|A|1295
9KN0|1|2|U|1296
9KN0|1|2|U|1297
9KN0|1|2|G|1298
9KN0|1|2|A|1299
9KN0|1|2|U|1300
9KN0|1|2|A|1301
9KN0|1|2|G|1302
9KN0|1|2|C|1303
9KN0|1|2|U|1304
9KN0|1|2|C|1305
9KN0|1|2|U|1306
9KN0|1|2|U|1307
9KN0|1|2|U|1308
9KN0|1|2|C|1309
9KN0|1|2|U|1310
9KN0|1|2|C|1311
9KN0|1|2|G|1312
9KN0|1|2|A|1313
9KN0|1|2|U|1314
9KN0|1|2|U|1315
9KN0|1|2|C|1316

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31