HL_9KN0_027

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAUUGCAAUUAUUCC

Length

16 nucleotides

Bulged bases

9KN0|1|2|U|1615, 9KN0|1|2|U|1616, 9KN0|1|2|G|1617, 9KN0|1|2|U|1621, 9KN0|1|2|U|1622, 9KN0|1|2|A|1623, 9KN0|1|2|U|1624

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|G|1612
9KN0|1|2|G|1613
9KN0|1|2|A|1614
9KN0|1|2|U|1615
9KN0|1|2|U|1616
9KN0|1|2|G|1617
9KN0|1|2|C|1618
9KN0|1|2|A|1619
9KN0|1|2|A|1620
9KN0|1|2|U|1621
9KN0|1|2|U|1622
9KN0|1|2|A|1623
9KN0|1|2|U|1624
9KN0|1|2|U|1625
9KN0|1|2|C|1626
9KN0|1|2|C|1627

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain d

Small ribosomal subunit protein uS14