HL_9KN5_003

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9KN5|1|S2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN5_003 not in the Motif Atlas

Homologous match to HL_9PN5_079

Geometric discrepancy: 0.134

The information below is about HL_9PN5_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9KN5|1|S2|G|156
9KN5|1|S2|U|157
9KN5|1|S2|A|158
9KN5|1|S2|A|159
9KN5|1|S2|U|160
9KN5|1|S2|U|161
9KN5|1|S2|C|162

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24