HL_9KN5_004

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KN5_004 not in the Motif Atlas

Geometric match to HL_4C7O_001

Geometric discrepancy: 0.2663

The information below is about HL_4C7O_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9KN5|1|S2|U|197
9KN5|1|S2|U|198
9KN5|1|S2|C|199
9KN5|1|S2|G|200
9KN5|1|S2|C|201
9KN5|1|S2|G|202

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SI

40S ribosomal protein S8