HL_9KN5_024

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

9KN5|1|S2|U|1300, 9KN5|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN5|1|S2|A|1295
9KN5|1|S2|U|1296
9KN5|1|S2|U|1297
9KN5|1|S2|G|1298
9KN5|1|S2|A|1299
9KN5|1|S2|U|1300
9KN5|1|S2|A|1301
9KN5|1|S2|G|1302
9KN5|1|S2|C|1303
9KN5|1|S2|U|1304

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain sh

Ubiquitin-40S ribosomal protein S27a