HL_9KN5_028
3D structure
- PDB id
- 9KN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUUCAG
- Length
- 7 nucleotides
- Bulged bases
- 9KN5|1|S2|U|1463
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KN5_028 not in the Motif Atlas
- Geometric match to HL_8B0X_024
- Geometric discrepancy: 0.2141
- The information below is about HL_8B0X_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 456
Unit IDs
9KN5|1|S2|C|1460
9KN5|1|S2|G|1461
9KN5|1|S2|U|1462
9KN5|1|S2|U|1463
9KN5|1|S2|C|1464
9KN5|1|S2|A|1465
9KN5|1|S2|G|1466
Current chains
- Chain S2
- Chains: S2
Nearby chains
- Chain SR
- 40S ribosomal protein S17
- Chain Sc
- 40S ribosomal protein S28
- Chain Sg
- Receptor of activated protein C kinase 1
- Chain zz
- Internal ribosome entry site; IRES
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