HL_9KO9_004

3D structure

PDB id

9KO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of PsCas9-sgRNA binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

9KO9|1|B|U|108, 9KO9|1|B|U|110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KO9_004 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.159

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9KO9|1|B|C|107
9KO9|1|B|U|108
9KO9|1|B|C|109
9KO9|1|B|U|110
9KO9|1|B|G|111

Current chains

Chain B

RNA (131-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9