HL_9KRP_038

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCCUUUCUUGGAUCAACC

Length

19 nucleotides

Bulged bases

9KRP|1|zz|U|195, 9KRP|1|zz|U|196, 9KRP|1|zz|C|197, 9KRP|1|zz|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|zz|G|190
9KRP|1|zz|U|191
9KRP|1|zz|C|192
9KRP|1|zz|C|193
9KRP|1|zz|U|194
9KRP|1|zz|U|195
9KRP|1|zz|U|196
9KRP|1|zz|C|197
9KRP|1|zz|U|198
9KRP|1|zz|U|199
9KRP|1|zz|G|200
9KRP|1|zz|G|201
9KRP|1|zz|A|202
9KRP|1|zz|U|203
9KRP|1|zz|C|204
9KRP|1|zz|A|205
9KRP|1|zz|A|206
9KRP|1|zz|C|207
9KRP|1|zz|C|208

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain 3h

Eukaryotic translation initiation factor 3 subunit H