HL_9KZX_012

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCGGACUGUCCCCAGUGCGCC

Length

22 nucleotides

Bulged bases

9KZX|1|L5|C|1172, 9KZX|1|L5|G|1178, 9KZX|1|L5|U|1179, 9KZX|1|L5|C|1181, 9KZX|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|1170
9KZX|1|L5|G|1171
9KZX|1|L5|C|1172
9KZX|1|L5|G|1173
9KZX|1|L5|G|1174
9KZX|1|L5|A|1175
9KZX|1|L5|C|1176
9KZX|1|L5|U|1177
9KZX|1|L5|G|1178
9KZX|1|L5|U|1179
9KZX|1|L5|C|1180
9KZX|1|L5|C|1181
9KZX|1|L5|C|1182
9KZX|1|L5|C|1183
9KZX|1|L5|A|1184
9KZX|1|L5|G|1185
9KZX|1|L5|U|1186
9KZX|1|L5|G|1187
9KZX|1|L5|C|1188
9KZX|1|L5|G|1189
9KZX|1|L5|C|1190
9KZX|1|L5|C|1191

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5