HL_9KZX_017

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

9KZX|1|L5|A|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|1436
9KZX|1|L5|C|1437
9KZX|1|L5|U|1438
9KZX|1|L5|C|1439
9KZX|1|L5|U|1440
9KZX|1|L5|C|1441
9KZX|1|L5|C|1442
9KZX|1|L5|A|1443
9KZX|1|L5|G|1444
9KZX|1|L5|U|1445
9KZX|1|L5|C|1446
9KZX|1|L5|C|1447
9KZX|1|L5|G|1448

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18