HL_9KZX_041

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9KZX|1|L5|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZX_041 not in the Motif Atlas

Homologous match to HL_8GLP_047

Geometric discrepancy: 0.1401

The information below is about HL_8GLP_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9KZX|1|L5|C|2872
9KZX|1|L5|U|2873
9KZX|1|L5|U|2874
9KZX|1|L5|C|2875
9KZX|1|L5|G|2876
9KZX|1|L5|G|2877

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA