HL_9KZX_087
3D structure
- PDB id
- 9KZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGUUCUAUUUUGUUGGUUUUCGGAACUG
- Length
- 29 nucleotides
- Bulged bases
- 9KZX|1|S2|U|887, 9KZX|1|S2|U|889, 9KZX|1|S2|G|891, 9KZX|1|S2|U|892, 9KZX|1|S2|U|896, 9KZX|1|S2|U|899
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZX|1|S2|C|879
9KZX|1|S2|G|880
9KZX|1|S2|G|881
9KZX|1|S2|U|882
9KZX|1|S2|U|883
9KZX|1|S2|C|884
9KZX|1|S2|U|885
9KZX|1|S2|A|886
9KZX|1|S2|U|887
9KZX|1|S2|U|888
9KZX|1|S2|U|889
9KZX|1|S2|U|890
9KZX|1|S2|G|891
9KZX|1|S2|U|892
9KZX|1|S2|U|893
9KZX|1|S2|G|894
9KZX|1|S2|G|895
9KZX|1|S2|U|896
9KZX|1|S2|U|897
9KZX|1|S2|U|898
9KZX|1|S2|U|899
9KZX|1|S2|C|900
9KZX|1|S2|G|901
9KZX|1|S2|G|902
9KZX|1|S2|A|903
9KZX|1|S2|A|904
9KZX|1|S2|C|905
9KZX|1|S2|U|906
9KZX|1|S2|G|907
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SG
- 40S ribosomal protein S6
- Chain SL
- 40S ribosomal protein S11
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