HL_9KZX_102

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGGGUCGGCCCACGGCCCUGG

Length

22 nucleotides

Bulged bases

9KZX|1|S2|C|1762, 9KZX|1|S2|G|1763, 9KZX|1|S2|G|1764, 9KZX|1|S2|C|1765, 9KZX|1|S2|C|1766, 9KZX|1|S2|C|1767, 9KZX|1|S2|A|1768, 9KZX|1|S2|C|1769, 9KZX|1|S2|G|1770, 9KZX|1|S2|C|1773

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|C|1756
9KZX|1|S2|G|1757
9KZX|1|S2|G|1758
9KZX|1|S2|G|1759
9KZX|1|S2|G|1760
9KZX|1|S2|U|1761
9KZX|1|S2|C|1762
9KZX|1|S2|G|1763
9KZX|1|S2|G|1764
9KZX|1|S2|C|1765
9KZX|1|S2|C|1766
9KZX|1|S2|C|1767
9KZX|1|S2|A|1768
9KZX|1|S2|C|1769
9KZX|1|S2|G|1770
9KZX|1|S2|G|1771
9KZX|1|S2|C|1772
9KZX|1|S2|C|1773
9KZX|1|S2|C|1774
9KZX|1|S2|U|1775
9KZX|1|S2|G|1776
9KZX|1|S2|G|1777

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6