HL_9KZX_105

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KZX_105 not in the Motif Atlas

Homologous match to HL_3WFS_003

Geometric discrepancy: 0.3209

The information below is about HL_3WFS_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9KZX|1|zu|G|52
9KZX|1|zu|U|53
9KZX|1|zu|U|54
9KZX|1|zu|C|55
9KZX|1|zu|A|56
9KZX|1|zu|A|57
9KZX|1|zu|A|58
9KZX|1|zu|U|59
9KZX|1|zu|C|60

Current chains

Chain zu

tRNA

Nearby chains