HL_9KZX_106
3D structure
- PDB id
- 9KZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAGGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KZX_106 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.2133
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9KZX|1|zy|C|30
9KZX|1|zy|U|31
9KZX|1|zy|U|32
9KZX|1|zy|A|33
9KZX|1|zy|G|34
9KZX|1|zy|G|35
9KZX|1|zy|G|36
9KZX|1|zy|U|37
9KZX|1|zy|G|38
Current chains
- Chain zy
- tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Se
- 40S ribosomal protein S30
- Chain zv
- mRNA
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