HL_9KZX_109

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCCUUUCUUGGAUCAA

Length

16 nucleotides

Bulged bases

9KZX|1|zz|U|195, 9KZX|1|zz|U|196, 9KZX|1|zz|C|197, 9KZX|1|zz|U|198, 9KZX|1|zz|U|203, 9KZX|1|zz|C|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zz|U|191
9KZX|1|zz|C|192
9KZX|1|zz|C|193
9KZX|1|zz|U|194
9KZX|1|zz|U|195
9KZX|1|zz|U|196
9KZX|1|zz|C|197
9KZX|1|zz|U|198
9KZX|1|zz|U|199
9KZX|1|zz|G|200
9KZX|1|zz|G|201
9KZX|1|zz|A|202
9KZX|1|zz|U|203
9KZX|1|zz|C|204
9KZX|1|zz|A|205
9KZX|1|zz|A|206

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A

Chain 3c

Eukaryotic translation initiation factor 3 subunit C

Chain 3h

Eukaryotic translation initiation factor 3 subunit H