HL_9KZX_111

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUUGGGUCG

Length

10 nucleotides

Bulged bases

9KZX|1|zz|U|264, 9KZX|1|zz|U|265, 9KZX|1|zz|U|269, 9KZX|1|zz|C|270

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zz|U|262
9KZX|1|zz|G|263
9KZX|1|zz|U|264
9KZX|1|zz|U|265
9KZX|1|zz|G|266
9KZX|1|zz|G|267
9KZX|1|zz|G|268
9KZX|1|zz|U|269
9KZX|1|zz|C|270
9KZX|1|zz|G|271

Current chains

Chain zz

HCV IRES

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SB

40S ribosomal protein S3a

Chain Sb

40S ribosomal protein S27