HL_9L0R_064

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UUAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L0R_064 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.1851

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9L0R|1|D|U|537
9L0R|1|D|U|538
9L0R|1|D|A|539
9L0R|1|D|G|540
9L0R|1|D|C|541
9L0R|1|D|G|542

Current chains

Chain D

RNA (700-MER)

Nearby chains

Chain K

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA