HL_9L0R_076

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

AGGAUAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9L0R_076 not in the Motif Atlas

Geometric match to HL_3DIL_003

Geometric discrepancy: 0.3556

The information below is about HL_3DIL_003

Detailed Annotation

GNRA

Broad Annotation

GNRA

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9L0R|1|E|A|272
9L0R|1|E|G|273
9L0R|1|E|G|274
9L0R|1|E|A|275
9L0R|1|E|U|276
9L0R|1|E|A|277
9L0R|1|E|U|278

Current chains

Chain E

RNA (700-MER)

Nearby chains

Chain D

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA