HL_9LGI_001

3D structure

PDB id

9LGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a type II-D CRISPR-Cas9 in complex with single-guided RNA and double-stranded DNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9LGI_001 not in the Motif Atlas

Geometric match to HL_7R97_001

Geometric discrepancy: 0.1666

The information below is about HL_7R97_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9LGI|1|B|U|39
9LGI|1|B|G|40
9LGI|1|B|A|41
9LGI|1|B|A|42
9LGI|1|B|A|43
9LGI|1|B|A|44

Current chains

Chain B

sgRNA (156-MER)

Nearby chains