HL_9LMF_036

3D structure

PDB id

9LMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA 3' domain decamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UUAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9LMF_036 not in the Motif Atlas

Geometric match to HL_8XPP_001

Geometric discrepancy: 0.1975

The information below is about HL_8XPP_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9LMF|1|E|U|537
9LMF|1|E|U|538
9LMF|1|E|A|539
9LMF|1|E|G|540
9LMF|1|E|C|541
9LMF|1|E|G|542

Current chains

Chain E

RNA (700-MER)

Nearby chains

Chain H

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA