HL_9LMF_070

3D structure

PDB id

9LMF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA 3' domain decamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

AGGGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9LMF_070 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.2486

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9LMF|1|I|A|628
9LMF|1|I|G|629
9LMF|1|I|G|630
9LMF|1|I|G|631
9LMF|1|I|A|632
9LMF|1|I|U|633

Current chains

Chain I

RNA (700-MER)

Nearby chains

Chain C

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA