HL_9M0P_044

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9M0P_044 not in the Motif Atlas

Homologous match to HL_8GLP_062

Geometric discrepancy: 0.0559

The information below is about HL_8GLP_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52651.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

33

Unit IDs

9M0P|1|L5|C|4270
9M0P|1|L5|A|4271
9M0P|1|L5|G|4272
9M0P|1|L5|A|4273
9M0P|1|L5|A|4274
9M0P|1|L5|G|4275
9M0P|1|L5|G|4276
9M0P|1|L5|G|4277

Current chains

Chain L5

28S ribosomal RNA|HOMO SAPIENS

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lo

60S ribosomal protein L36a