HL_9M0P_089

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

9M0P|1|S2|U|1463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9M0P_089 not in the Motif Atlas

Geometric match to HL_1M5K_003

Geometric discrepancy: 0.2418

The information below is about HL_1M5K_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9M0P|1|S2|C|1460
9M0P|1|S2|G|1461
9M0P|1|S2|U|1462
9M0P|1|S2|U|1463
9M0P|1|S2|C|1464
9M0P|1|S2|A|1465
9M0P|1|S2|G|1466

Current chains

Chain S2

18S ribosomal RNA|HOMO SAPIENS

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sg

Receptor of activated protein C kinase 1