HL_9M0P_096

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

9M0P|1|S6|C|56, 9M0P|1|S6|G|57

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9M0P_096 not in the Motif Atlas

Homologous match to HL_4JXZ_003

Geometric discrepancy: 0.2544

The information below is about HL_4JXZ_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

9M0P|1|S6|G|53
9M0P|1|S6|A|54
9M0P|1|S6|U|55
9M0P|1|S6|C|56
9M0P|1|S6|G|57
9M0P|1|S6|A|58
9M0P|1|S6|A|59
9M0P|1|S6|A|60
9M0P|1|S6|C|61

Current chains

Chain S6

HUMAN INITIATOR MET-TRNA-I|HOMO SAPIENS

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA