HL_9MDS_009

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUUCGAUAGUAGCCCAAGAGGAAU

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|A|A|388
9MDS|1|A|A|389
9MDS|1|A|U|390
9MDS|1|A|U|391
9MDS|1|A|C|392
9MDS|1|A|G|393
9MDS|1|A|A|394
9MDS|1|A|U|395
9MDS|1|A|A|396
9MDS|1|A|G|397
9MDS|1|A|U|398
9MDS|1|A|A|399
9MDS|1|A|G|400
9MDS|1|A|C|401
9MDS|1|A|C|402
9MDS|1|A|C|403
9MDS|1|A|A|404
9MDS|1|A|A|405
9MDS|1|A|G|406
9MDS|1|A|A|407
9MDS|1|A|G|408
9MDS|1|A|G|409
9MDS|1|A|A|410
9MDS|1|A|A|411
9MDS|1|A|U|412

Current chains

Chain A

RNA (598-MER)

Nearby chains

Chain D

RNA (598-MER)