HL_9MDS_064

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MDS_064 not in the Motif Atlas

Geometric match to HL_6CU1_002

Geometric discrepancy: 0.1306

The information below is about HL_6CU1_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9MDS|1|E|G|363
9MDS|1|E|G|364
9MDS|1|E|A|365
9MDS|1|E|A|366
9MDS|1|E|A|367
9MDS|1|E|C|368

Current chains

Chain E

RNA (598-MER)

Nearby chains

Chain H

RNA (598-MER)