HL_9MEE_142

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_142 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3308

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9MEE|1|G|C|654
9MEE|1|G|C|655
9MEE|1|G|G|656
9MEE|1|G|C|657
9MEE|1|G|A|658
9MEE|1|G|A|659
9MEE|1|G|G|660

Current chains

Chain G

GOLLD RNA nanocage

Nearby chains

Chain H

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA