HL_9MEE_158

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UACCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_158 not in the Motif Atlas

Geometric match to HL_6UFM_005

Geometric discrepancy: 0.2549

The information below is about HL_6UFM_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9MEE|1|H|U|368
9MEE|1|H|A|369
9MEE|1|H|C|370
9MEE|1|H|C|371
9MEE|1|H|A|372
9MEE|1|H|G|373

Current chains

Chain H

GOLLD RNA nanocage

Nearby chains

Chain I

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA