HL_9MEE_175

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_175 not in the Motif Atlas

Geometric match to HL_8CRE_222

Geometric discrepancy: 0.1544

The information below is about HL_8CRE_222

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9MEE|1|I|C|200
9MEE|1|I|G|201
9MEE|1|I|G|202
9MEE|1|I|A|203
9MEE|1|I|A|204
9MEE|1|I|G|205

Current chains

Chain I

GOLLD RNA nanocage

Nearby chains

Chain H

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA