HL_9MEE_215

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAACA

Length

5 nucleotides

Bulged bases

9MEE|1|K|C|146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_215 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.2548

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9MEE|1|K|U|143
9MEE|1|K|A|144
9MEE|1|K|A|145
9MEE|1|K|C|146
9MEE|1|K|A|147

Current chains

Chain K

GOLLD RNA nanocage

Nearby chains

Chain J

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA

Chain L

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA