HL_9MEE_240

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9MEE|1|L|A|310, 9MEE|1|L|A|311, 9MEE|1|L|A|312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_240 not in the Motif Atlas

Geometric match to HL_8CRE_006

Geometric discrepancy: 0.1087

The information below is about HL_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9MEE|1|L|G|308
9MEE|1|L|G|309
9MEE|1|L|A|310
9MEE|1|L|A|311
9MEE|1|L|A|312
9MEE|1|L|C|313

Current chains

Chain L

GOLLD RNA nanocage

Nearby chains