HL_9MEE_258

3D structure

PDB id

9MEE (explore in PDB, NAKB, or RNA 3D Hub)

Description

GOLLD RNA nanocage (env-38)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUGCAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MEE_258 not in the Motif Atlas

Geometric match to HL_6R47_001

Geometric discrepancy: 0.1858

The information below is about HL_6R47_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

9MEE|1|M|U|178
9MEE|1|M|U|179
9MEE|1|M|U|180
9MEE|1|M|G|181
9MEE|1|M|C|182
9MEE|1|M|A|183
9MEE|1|M|G|184
9MEE|1|M|A|185

Current chains

Chain M

GOLLD RNA nanocage

Nearby chains