HL_9MKX_001

3D structure

PDB id

9MKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

FnoCas12a bridge helix variant state 4b

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CUGUUG

Length

6 nucleotides

Bulged bases

9MKX|1|B|G|-9, 9MKX|1|B|U|-8, 9MKX|1|B|U|-7

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MKX_001 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.0992

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9MKX|1|B|C|-11
9MKX|1|B|U|-10
9MKX|1|B|G|-9
9MKX|1|B|U|-8
9MKX|1|B|U|-7
9MKX|1|B|G|-6

Current chains

Chain B

RNA (31-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas12a